Problem Set #3: Protein Structure and Function

1) Polyaspartate, (Asp)n,forms regions of a helices in aqueous solutions below pH 3.0, but above pH 5.0, it assumes an extended conformation.

2) Studies of amino acid substitutions in proteins (mutations) have revealed the following. Explain each observation: 3) List five forces that are responsible for maintaining the correct three-dimensional shapes of proteins. Specify which groups on the protein are involved in each type of interaction.

4) Why is proline frequently found at the places where the polypeptide chain turns over in both hemoglobin and myoglobin?

5) What is the difference between hair and silk at the molecular level? How does this difference give rise to the fact that hair stretches more easily than silk does?

6) List two similarities and two differences in the structures between hemoglobin and myoglobin.

7) A number of mutant hemoglobins, in addition to HbS, have single amino acid residue replacements in either the a or b chain. In a mutant hemoglobin known as Hb Providence, an asparagine residue replaces Lys b-EF6 which projects into the central cavity of the tetrameric protein.

8) How does the oxygen binding curve of fetal hemoglobin differ from the oxygen binding curve of adult hemoglobin? How are the differences in the oxygen binding curves related to differences in the structures of the two hemoglobins? How are the differences in the oxygen binding curves related to the differences in the binding affinity of 2,3 bisphosphoglycerate for these two hemoglobins? How are the differences in the oxygen affinity binding curves for the two hemoglobins related to differences in function for the two hemoglobins?


Solutions for Problem Set #3
 
Problem #1

Problem #2

Problem #3

Problem #4

Problem #5

Problem #6

Problem #7

Problem #8